Protein Info for CSW01_16905 in Vibrio cholerae E7946 ATCC 55056

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 153 to 178 (26 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details PF09335: VTT_dom" amino acids 59 to 172 (114 residues), 64.9 bits, see alignment E=5e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_000794)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>CSW01_16905 DedA family protein (Vibrio cholerae E7946 ATCC 55056)
MDSVLSIFSALWHHDAFALQNVNLLLLYFCLALLIFLESGFLPAAPLPCDSVIVLSGSLA
ATGVLQLHWVLITLFLAGWLGSLVAFYQGSQLKHWRIINNWLAKVPDKQLMMTDKLMRRY
GLIALFFGRFFPVVRSLLPMVMGLRNSVQPLRFLSASAISALCWVLFLVGAGFGISLLPT
KLEQFATKLLMIAPIFTLILALLTFAASAILKKRERKVKVTVED