Protein Info for CSW01_14800 in Vibrio cholerae E7946 ATCC 55056

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 283 to 308 (26 residues), see Phobius details amino acids 320 to 338 (19 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details PF03222: Trp_Tyr_perm" amino acids 10 to 398 (389 residues), 437.6 bits, see alignment E=2.4e-135 TIGR00837: aromatic amino acid transport protein" amino acids 16 to 391 (376 residues), 439.9 bits, see alignment E=4.9e-136

Best Hits

Swiss-Prot: 49% identical to MTR_HAEIN: Tryptophan-specific transport protein (mtr) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K03835, tryptophan-specific transport protein (inferred from 100% identity to vcm:VCM66_A0158)

MetaCyc: 45% identical to tryptophan:H+ symporter Mtr (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-142; TRANS-RXN-76

Predicted SEED Role

"Tryptophan-specific transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>CSW01_14800 transposase (Vibrio cholerae E7946 ATCC 55056)
MKPKDFIMSKQPSLFGGACIIASVCVGAGMLGLPSAGAGAWTLWSMLALALTMAVMTLSG
WMLLEAFKHYDLRVSFNTVTKDMLGSHINRFNNLTVYFVGGILLYAYITSSGLILQDLLH
INSKIASILFVAVFSAFVWHSTRAVDRISVILIVFMVLSFIFGVSGLAINVKTSILFDTL
NQSGEYAPYAMAMLPVALTSFGYHHSVSSMRAYYGEERKAKYAILGGTVIALSLYALWLF
SIFGNLPRADFAPVIQQGGNVDVLLKALGSVVESEKVSQAINAFSMAAILSSFIGVGLGV
FDFLADLFQFSNCKQGRTKTWLVTFLPPLILSLLFPFGFIIAIGYAGAAATIWACIIPVL
LARKSRTLANGAQGFVVPGGNLALGLVLIFGVLTAVFHMMAMANLLPAFKG