Protein Info for CSW01_14710 in Vibrio cholerae E7946 ATCC 55056

Annotation: Spindolin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF03067: LPMO_10" amino acids 39 to 227 (189 residues), 159.2 bits, see alignment E=2.7e-50 PF18416: GbpA_2" amino acids 250 to 347 (98 residues), 40.6 bits, see alignment E=4.3e-14 PF02839: CBM_5_12" amino acids 361 to 401 (41 residues), 36.4 bits, see alignment 6.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VCA0140)

Predicted SEED Role

"Spindolin-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>CSW01_14710 Spindolin (Vibrio cholerae E7946 ATCC 55056)
MANNKSHNQEGITMKYGLKISALGSVILGVLAASQVQAHGWVEFPSARQNTCYLDGGFWD
NAIPNQACQAAYDVSGAFPFVQRNEISANVQKYRDMAAVKAVVKDGELCSAGDKAKAGLN
VPSAHWQKTGITLDANGQIEVVFHAATPHNPSYWQFYLSKATYDHTKPLTWDDLELVGSS
DDVAAGSDKKYRFKVTLPQDRSGDAILYTRWQRVDAGGEGFYNCSDITFGGTTTPPDPTD
PTDPVKLTALGYYVPQGFGPVEVGDSVRLRTFDTTGMETTDIALPIRANNLETWPAELAG
QFNQLKNGEWFIGIWHQEMNHYMFDTQNLYANQVFAPNSNLTYRLSLTKGDTTPPTQPEN
AWDKSKTYTAGAVVTHKGKSWTAQWWTQGEEPGTTGEWGVWR