Protein Info for CSW01_14490 in Vibrio cholerae E7946 ATCC 55056

Annotation: endo-1,4-beta-xylanase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13688: Reprolysin_5" amino acids 23 to 226 (204 residues), 45.9 bits, see alignment E=1.7e-15 PF13583: Reprolysin_4" amino acids 38 to 229 (192 residues), 43.1 bits, see alignment E=8e-15 PF13582: Reprolysin_3" amino acids 45 to 192 (148 residues), 92 bits, see alignment E=8.4e-30 PF01483: P_proprotein" amino acids 324 to 406 (83 residues), 76.2 bits, see alignment E=3.4e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_A0094)

Predicted SEED Role

"FIG01200308: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>CSW01_14490 endo-1,4-beta-xylanase (Vibrio cholerae E7946 ATCC 55056)
MKKASLALAVSVGLCSPAIWATTEIDVLGLYTPDTAKGFKQEHVAQMQHSVNVANKVLKD
SGLDIKVNLAATKEVQYDTQPGLKKSQSEVLDAATPFNRIDPAFADVEAYRQQVGADMVA
IFRYLDVNNSPDYERQPNGSYSISCGLAWIVAPSAWKYPQNAKKSMYSHSYLNECGAETF
IHELGHNFGLNHAHEQYRELPHHNNGTEVDAYGYGIKGQFATIMAYPHLFGVGRSYKFSS
PNLQCEGAPCGVKDYANSVRAIGLTAPHIAQVYTGTKPPVDDGNPGDTEPTDNTNNVFTI
KGPLALPDMKILTLPIVVSAQQSSTAQVAIDITHEYRGDLSIRLFAPDGSYWVLKQANRY
DRGQSYNVQFTLNDVDPSAAEGEWRLEIQDHFGGKLGTLNQFQITFP