Protein Info for CSW01_14420 in Vibrio cholerae E7946 ATCC 55056

Annotation: peptidase M23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF04225: LysM_OapA" amino acids 75 to 155 (81 residues), 29 bits, see alignment E=1.4e-10 PF19425: Csd3_N2" amino acids 162 to 284 (123 residues), 99.6 bits, see alignment E=1.9e-32 PF01551: Peptidase_M23" amino acids 296 to 389 (94 residues), 119.8 bits, see alignment E=7.1e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_0060)

Predicted SEED Role

"Cell wall endopeptidase, family M23/M37"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>CSW01_14420 peptidase M23 (Vibrio cholerae E7946 ATCC 55056)
MISKSIILRFSELSMRKKATLVGLPLLAVAAISSSLNSPTRQQRIELSLPESPLVQFSSA
EHTVEVVKVGHPDYEYEIKPGDNLSTIFNQLGFAYTELMKVMETDLNYLALDTLRPGNVL
RFWKGSDNTLAKMELEFSLVDRAVYTRLNDGSYEFEERKIPGTWKVEPLIGEVDGSFSLS
ANRAGLGAADVDQIVTLLKDKINFGRDLRRGDRFEVVLSRQLVGEKLTGNSEIQAIKIFN
RGKEITAYLHQDGQYYDKNGDSLQRAFQRYPVDSKWRISSNFDPRRLHPVTKRVAPHNGT
DFAMPIGTPVYTSGDGVVVMTRNHPYAGNYVVIQHGNTYMTRYLHLSKILVKKGQKVSRG
QRIGLSGNTGRVTGPHLHYELIVRGRPVNAMKANIPMASSVPKKEMAQFIAKRKELDQML
ARQESMLAAQ