Protein Info for CSW01_14405 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 transmembrane" amino acids 19 to 39 (21 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 143 to 167 (25 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details amino acids 403 to 424 (22 residues), see Phobius details amino acids 435 to 457 (23 residues), see Phobius details PF07670: Gate" amino acids 143 to 238 (96 residues), 55.1 bits, see alignment E=4.8e-19

Best Hits

Swiss-Prot: 52% identical to Y2044_BACPE: Uncharacterized protein BpOF4_10220 (BpOF4_10220) from Bacillus pseudofirmus (strain OF4)

KEGG orthology group: None (inferred from 100% identity to vch:VCA0076)

Predicted SEED Role

"Predicted arginine uptake transporter" in subsystem Arginine Biosynthesis extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>CSW01_14405 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MQDNAQTLEPPAKAGTGNLWMFLIPSLIGLFLFMAPISYDGSLTIPVAVLAKSVQALFGD
TLVTVVTAIIAFMSVASVICKVFKPSWVMSRPFLNSLFNPSWLWLTVRVIGGAAVIMTFF
QIGPKAIWEENTGGLVLQGLLPTLFSVFIFAGLLLPLLLNFGLLELFGSLLSKVMRPLFN
LPGRSAIDCMASWLGDGSVGILLTSKQYEEKFYTQREAAVVGTTFSAVSITFSLVVIAQV
ELEHLFLPFYGAVCLAGLVAAVVIPRLPPLSWKKDTYIDGSKPHPDADAIPEGHSAFSWG
MELALTKAAKVKSVQSVIGEGIRNAVDMVFGVLPVVMGLGTIALVIAEYTSVFSLLGQPF
IPFLELLGVPEATAASKTIVVGFADMFIPAILAASIDNEMTRFVIAAMSVTQLIYMSEVG
ALLLGSRIPVNIVELFVIFILRTLITLPVIAAVAHLLF