Protein Info for CSW01_12900 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF490 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1254 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF04357: TamB" amino acids 917 to 1253 (337 residues), 224.5 bits, see alignment E=1.4e-70

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to vcj:VCD_001815)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1254 amino acids)

>CSW01_12900 DUF490 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MIKRALKWTKWLSMSLLVLVILLVLALAGALFTNPGLHVVLWGAQQALPQLKVEQAQGAL
FPRFTLQGVNYADSELNLSFSVQKLSLAINPNCLLEPSICINELALSGVKLDLPSLAESE
PAPDEPDSEPLGDISTPIPIRLGQLALQDIELNILGNRVAWQQLTTRASWQGNRLRIGQT
EWQGIRLALAESEASTEPEAAQAATSDSAEPLQLPDVMIPLHIELARFDIRDFRLEQETP
IIVNHLALQATAAQHDVSISSLELSMPELDAQLNAQATLSQDYPIQLELRSQVHLADFKG
QTLSLAAQGSLADLTVQANLDSLAQAQLNSHFNLLDADIPFDLQLSQVKAQWPMLGEGDY
HVEVPELSIQGSLAKYQFALQGALQGKDLPNVSLALQGHGNLDEVALQSLKVDTLGGLVT
GNAVANWKNPLNWAARLNLKNIQPGLQWPEAEGKISGELDTSGALTEQGGWQVEVSRLAI
KGVLRDYPLKMLGELSASDVQGQGDITLQTKGVSLVHGPNSLTAKGQLSKQWRMSVELDV
PDLSKSLPDAKGKVIGDVLLRGDLKQPRVKLVLDADSLQWQELGSIGHVTLQGNLVPLPE
PQGELTLQVRAIQYQDQRIDTVDLKAQGSQRKHEVTLDVTSDLASTSLAMNGRLRTEPTL
RWQGELERMWLNSPQGQWLLQQATALSFDQRTERVTVAAHCWVQGEASLCLEEEAELGAR
GETRLAIKQFDFKQLAGVLPKETKLSGGLNGQVWAKWAPKAAPQLQANLELTQGQVTQKL
NKSVTFGWDKAQFSAQLAKNQLQASWLLDATDNGDLSGNIQIADVRAEQKTMLGSLNLTT
FNLDFLQPLIGELSEAKSNINADVQFHGPMLHPQLNGEIAINDIRVKGEISPVDVQSGQV
SLKFNGYQAVLNADIQTTDGLLEVDGDADWQQIEDWRLKARVHAPSMMVELPPMVRVKVI
PDLTLTMQPQLARVTGNIALPWGRIVVEELPPSAIGVSKDQILLNADFEPLTDKERIPFS
VESDVNVQIGDDFQLSAFGLQGNLVGRLNVAQKDKGPFILGEVNIRNGQYRSFGQDLQIK
EGKILMNGPVDQPYLAITAIRNPNNTQDGVVAGVRVSGPSDEPSLTIFSEPAMPQANALS
YLLRGQNIDGEAGGNAMTTTLIGLSLAQSGKLVGEIGQAFGVQDLQLDTAGSGDDSQVTV
SGYILPGLQVKYGVGIFNSVGEFTVRYRLMQDLYLEAVSGVDSAVDLLYQFEFN