Protein Info for CSW01_12830 in Vibrio cholerae E7946 ATCC 55056

Annotation: RNase adaptor protein RapZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF03668: ATP_bind_2" amino acids 1 to 284 (284 residues), 372.7 bits, see alignment E=6.2e-116

Best Hits

Swiss-Prot: 100% identical to Y2532_VIBCH: Nucleotide-binding protein VC_2532 (VC_2532) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 100% identity to vcm:VCM66_2453)

Predicted SEED Role

"FIG000506: Predicted P-loop-containing kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (286 amino acids)

>CSW01_12830 RNase adaptor protein RapZ (Vibrio cholerae E7946 ATCC 55056)
MRLIVVSGQSGAGKSVALRVLEDLGYYCVDNLPVSLLTAFIQSVQGSQQNVAVSIDIRNL
PKEPSLVQDVLDQLKQNNDVSMLFLDASKETLLKRYSETRRIHPLSLSQSKPSLAQAIEL
EKQLLGPLKEQADLLLDSSNQSLHELSETVRMRIEGRERKDLVMVFQSFGFKYGLPTDAD
YVFDVRFLPNPHWEPDLRPLTGLDAPIKSFLEGHSEVMELKQQIQKFFEYWLPMLEKNNR
SYLTIAIGCTGGKHRSVYLTQQLGEYFAQLGHQVQLRHTSLEKQQS