Protein Info for CSW01_12740 in Vibrio cholerae E7946 ATCC 55056

Annotation: 1-acyl-sn-glycerol-3-phosphate acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details TIGR00530: 1-acylglycerol-3-phosphate O-acyltransferases" amino acids 69 to 199 (131 residues), 148.6 bits, see alignment E=4.2e-48 PF01553: Acyltransferase" amino acids 73 to 199 (127 residues), 121.8 bits, see alignment E=8.9e-40

Best Hits

Swiss-Prot: 59% identical to PLSC_ECOLI: 1-acyl-sn-glycerol-3-phosphate acyltransferase (plsC) from Escherichia coli (strain K12)

KEGG orthology group: K00655, 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC: 2.3.1.51] (inferred from 100% identity to vch:VC2513)

MetaCyc: 59% identical to 1-acylglycerol-3-phosphate O-acyltransferase PlsC (Escherichia coli K-12 substr. MG1655)
1-acylglycerol-3-phosphate O-acyltransferase. [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]; 2.3.1.51 [EC: 2.3.1.51]

Predicted SEED Role

"1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Phosphate metabolism (EC 2.3.1.51)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.51

Use Curated BLAST to search for 2.3.1.51

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>CSW01_12740 1-acyl-sn-glycerol-3-phosphate acyltransferase (Vibrio cholerae E7946 ATCC 55056)
MGRNPRVSAFFFQCLRRSCMIALLRILAVAVFAVYMFVFGCGYCLFSPRNPKHVYTFGKQ
FAAMSKVFGIKLEYRAPADVDQRGQHIYIANHQNNWDLFTVSKAVTPKVVTVGKKSLAWM
PLFGQLYWLTGNILIDRANKAKAKGTIDQVVDSMKQSDVSVWMFPEGTRSRGRGLLPFKA
GAFHAAIGAGVPIIPIVCSSTDKLKFNRWNNGHVIVEVLPPISTEGYSKENIRELSQHCY
DLMKAKLAQLDAEVAELNRKA