Protein Info for CSW01_12530 in Vibrio cholerae E7946 ATCC 55056

Annotation: YecA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF03695: UPF0149" amino acids 11 to 179 (169 residues), 126.7 bits, see alignment E=6.2e-41 TIGR02292: yecA family protein" amino acids 21 to 176 (156 residues), 41.3 bits, see alignment E=6.5e-15

Best Hits

Swiss-Prot: 100% identical to Y2399_VIBCM: UPF0149 protein VCM66_2399 (VCM66_2399) from Vibrio cholerae serotype O1 (strain M66-2)

KEGG orthology group: K09895, hypothetical protein (inferred from 100% identity to vcj:VCD_001879)

Predicted SEED Role

"FIG001590: Putative conserved exported protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>CSW01_12530 YecA family protein (Vibrio cholerae E7946 ATCC 55056)
MSKNRLPAYPALANELRSASLGINPAELQGLLTGMLSGGLSLNDKSWQALVFDYTNDGMG
WPIGALASAEQILLAMSAQLVDTDFELSLLLPEGEGEEALFELADAVAEWINHFISGLGL
SGANLKHASVEAKEALEDLEEMSKLGIDEEDDLAEQAELLEQVIEHIKACVLVLHAEFGV
KPEQDTKPTVH