Protein Info for CSW01_12150 in Vibrio cholerae E7946 ATCC 55056

Annotation: cell division protein FtsQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details PF08478: POTRA_1" amino acids 53 to 122 (70 residues), 61.3 bits, see alignment E=9.1e-21 PF03799: FtsQ_DivIB_C" amino acids 126 to 238 (113 residues), 89.1 bits, see alignment E=3.8e-29

Best Hits

Swiss-Prot: 100% identical to FTSQ_VIBCH: Cell division protein FtsQ (ftsQ) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03589, cell division protein FtsQ (inferred from 100% identity to vcm:VCM66_2322)

Predicted SEED Role

"Cell division protein FtsQ" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>CSW01_12150 cell division protein FtsQ (Vibrio cholerae E7946 ATCC 55056)
MINKVLLEGQRITRSPQVKQHACGASFFLVVLLLIGGLLYSTISWMWDEQRLPLSKLVLQ
GDLHYVSALDVQRVLARLDHIGTFMSQDINVLQESVQSIPWVSHASIRKQWPDTIKVYLT
EYQVEALWNANALLDKNGTVFYGDIARVNGEYVKLYGPDGTAPQVLKAWRDYNPKFAQLG
LNISSLVLNDRRAWQIILDNGIRLELGKESLEERISRFFLLYKQLGNKAEQVSYIDLRYD
TGAAVGWFPEQELTQEKNDD