Protein Info for CSW01_11850 in Vibrio cholerae E7946 ATCC 55056

Annotation: chorismate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 19 to 24 (6 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 167 (28 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 347 to 376 (30 residues), see Phobius details PF02417: Chromate_transp" amino acids 3 to 168 (166 residues), 134.5 bits, see alignment E=1.9e-43 amino acids 211 to 373 (163 residues), 116.6 bits, see alignment E=6e-38 TIGR00937: chromate efflux transporter" amino acids 8 to 368 (361 residues), 296.2 bits, see alignment E=2.6e-92

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 100% identity to vcj:VCD_002009)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>CSW01_11850 chorismate-binding protein (Vibrio cholerae E7946 ATCC 55056)
MLTIFRTFFALGWVSFGGPAAHIGYFRHTFVEKLRWVSEQEYAQFVALSQFLPGPGSSQV
GFAIGYHRGGLAGAWAAFLGFTLPSVLIMLLLAGLSSHLLDTPLFEQMIHGLKLLAIIVV
ADACLTMYRNFCQQRLTAGLCVLTAVAITLAPGLITQFAVLLIAAFVGQARLAPQQSFST
TTFSPSWLSLLLFASLLLGLPLLAASSPLVELFGHFFQAGSLVFGGGHVVLPLLQNALGD
SLSTDQFLTGYAAAQAVPGPMFTLATYLGYVLTPEMPVVGALIATLAVFLPGFLLLLGVL
KNWSALAQRPKVAGAMQGVNACVVGLLLAALYQPVWSSTVHAPLDWAALLVGFFLFKVLR
LPLIGMVGSTLLFGVLSGLI