Protein Info for CSW01_11195 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar L-ring protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF02107: FlgH" amino acids 83 to 259 (177 residues), 193.7 bits, see alignment E=1e-61

Best Hits

Swiss-Prot: 100% identical to FLGH_VIBCM: Flagellar L-ring protein (flgH) from Vibrio cholerae serotype O1 (strain M66-2)

KEGG orthology group: K02393, flagellar L-ring protein precursor FlgH (inferred from 100% identity to vcj:VCD_002144)

Predicted SEED Role

"Flagellar L-ring protein FlgH" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>CSW01_11195 flagellar L-ring protein (Vibrio cholerae E7946 ATCC 55056)
MAAMKRLLASSLLILLSGCSLMQPPIESAETIQGTTTVDAVEGDKSESNSGLTDALRNRT
DPVAGDPAWAPIHPKGKPEHYAAETGSLFNLASSSSMYDDSKPRGVGDIITVTLNESTKA
AKSADADLNKKNDASMDPLAVGGKDLTIGDYNFSYALKNDNKFSGSAAANQSNSMSGSIT
VEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDIDFDNTIASNRISNARIQYSG
TGTNQDMQEPGFLARFFNVSL