Protein Info for CSW01_11150 in Vibrio cholerae E7946 ATCC 55056

Annotation: chromosome partitioning protein ParA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF07022: Phage_CI_repr" amino acids 16 to 80 (65 residues), 79.7 bits, see alignment E=1.7e-26 PF16452: Phage_CI_C" amino acids 113 to 209 (97 residues), 47.3 bits, see alignment E=2e-16

Best Hits

Predicted SEED Role

"Repressor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>CSW01_11150 chromosome partitioning protein ParA (Vibrio cholerae E7946 ATCC 55056)
MSDDKIMPFDYLKGDAFTSKLKEITKCKDFFELGALLNIPKATFSTWNTHDRTSHELMVR
LHLALGIPIEELALKPEDLKRFQPRVSEPKKSYQFEIAKNPQHETVILKSFCLTNGQLLE
TGELPYPVRRMNSFNLKSGSTIEVETNEALYLVDNDSRDAVSGNYLIDIDGRLSVNHIQR
LPGKKLAIAFGESTIEVSEHDIKVLGRVAVTLRKD