Protein Info for CSW01_10785 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 102 to 121 (20 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details PF01435: Peptidase_M48" amino acids 70 to 256 (187 residues), 113.9 bits, see alignment E=4.3e-36 PF13181: TPR_8" amino acids 309 to 340 (32 residues), 14.4 bits, see alignment (E = 1.8e-05) amino acids 346 to 374 (29 residues), 16.6 bits, see alignment (E = 3.5e-06) PF13174: TPR_6" amino acids 311 to 339 (29 residues), 12.3 bits, see alignment (E = 0.00012) PF14559: TPR_19" amino acids 352 to 416 (65 residues), 48.9 bits, see alignment E=3.3e-16

Best Hits

Swiss-Prot: 100% identical to BEPA_VIBCH: Putative beta-barrel assembly-enhancing protease (VC_2164) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_002211)

Predicted SEED Role

"Exported zinc metalloprotease YfgC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>CSW01_10785 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MKFFPTRTLLCLCIAAPCLPAIAQNDPIELPDIGTVAGSTLTIDQELIYGDAYMRMLRNN
QPVINDPVLNEYIDNLGHRLVASANDVKTPFTFFMIRDRNINAFAFFGGYVALHSGLFLH
AQSESELASVMAHEIAHVTQRHLARSMEEQARRSPATIAALAGSLLLAIAAPEAGIAAIN
ATMAGSIQGQINYTRSNEKEADRFGIATLAKAGFDANAMPQFFTRLADEYRYASKPPPML
LTHPLPEDRITDSRERARQYPPLKLAPHLDYHLARARIIARYAGIDADAALDWFARSEKK
IDATLQPSIQYGKALVYLDLKQFDKAEPLLTQLVKEQPDNHFYLDAISDLYIELKQADKA
QSLLEKALKQTPNNSVLTINYANVLLKQDKFTDAIRILQRYTHDNPNDINGWQLLSEANS
RLGNSAEDLAARGEIMALQANWNKAIQFYTQASQLVELGSLAQARYDARIDQLMVQRERF
LSLQ