Protein Info for CSW01_10685 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar hook-associated protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 PF02465: FliD_N" amino acids 10 to 107 (98 residues), 86 bits, see alignment E=3.5e-28 PF07196: Flagellin_IN" amino acids 125 to 178 (54 residues), 35.2 bits, see alignment 1.7e-12 PF07195: FliD_C" amino acids 430 to 655 (226 residues), 225.5 bits, see alignment E=1e-70

Best Hits

Swiss-Prot: 100% identical to FLID_VIBCH: Flagellar hook-associated protein 2 (fliD) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to vco:VC0395_A1724)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (666 amino acids)

>CSW01_10685 flagellar hook-associated protein 2 (Vibrio cholerae E7946 ATCC 55056)
MSLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNL
MTQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKF
GPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVS
GKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAE
KIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPED
RIPGWTETASGTLLDSYWEPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKL
EQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDG
YGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDR
ERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQ
APENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSM
TGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLAGM
MNALGG