Protein Info for CSW01_10595 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar biosynthetic protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 99 to 123 (25 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 239 to 265 (27 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details PF00813: FliP" amino acids 102 to 293 (192 residues), 275.7 bits, see alignment E=1.2e-86 TIGR01103: flagellar biosynthetic protein FliP" amino acids 102 to 297 (196 residues), 273.9 bits, see alignment E=4e-86

Best Hits

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 100% identity to vcm:VCM66_2046)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>CSW01_10595 flagellar biosynthetic protein FliP (Vibrio cholerae E7946 ATCC 55056)
MKRTQRLNLTSWLTTGLLTWLLSGLLGFTSLAFAEEPLNTAIPSTAAGASSVTVTALEKE
QGNAKTIALGSSSGGGGIPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFT
RIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMAPVFNQINEQAVQPYLNEQITARQ
AFDLAQEPLKAFMLKQTRVNDLETFVEMSGAQVTAPEQVSMAVLIPAFITSELKTAFQIG
FMLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSFAL