Protein Info for CSW01_10200 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF3413 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 51 to 76 (26 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details PF11893: DUF3413" amino acids 6 to 251 (246 residues), 354.8 bits, see alignment E=3e-110 PF00884: Sulfatase" amino acids 268 to 513 (246 residues), 87.8 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K07014, (no description) (inferred from 100% identity to vcm:VCM66_1965)

Predicted SEED Role

"FIG001881: hydrolase of alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>CSW01_10200 DUF3413 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MVDSGNTYGDRVSRLVGWGHWFAFFNIIAAMLIGTRYISQSPWPETLLGQLYLALSWVGH
FGFLVFALYLLVLFPLTFIIPSRSLFRFLAVCFSTLGLTVLLIDTQAYQIINLHLNPVVW
ELLFSDETSSVSADLQHLFVVLPLIFLLELGLSEWVWRKQRKLSHKRIGRPLAAVFFFSF
IASHLIYVWSDAYLYSPVTSQRANFPLSYPMTAKSFMEKHGLLDKEEYSKRLAEQNSDID
GLIYPLEPLEFSRRANNLNVLIVSINNLRADALTPELMPNTYQFANENLNFTNHYSSSND
MFGLFGLFYGLPSTYASSVRVQGNAPLLIDVMKKNDYQFGLFSGNNFADPLYKETMFRSL
PIEAIAVTNDESSPDEQAVQRWAEWLNVGQKQPWFSYLELTTVEEFSELSSAQESAEDRL
RSAYNLSVTQADQVINTVLEQLNSLKLMDNTVVVITSNHGTEFNETKTNTWGSNTNYSRY
QLQVPMVIHWPGKVAGTYAHRSSHLDFSVTLMQDLLGVSSNPVDYSSGKNLFNESKRKWI
LAGDARELALITDTQTTVLDKFGNFKVYDGDYQRLKETNPTLPVLMQGLTELQRFYAKDN