Protein Info for CSW01_09835 in Vibrio cholerae E7946 ATCC 55056

Annotation: benzoate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 85 to 86 (2 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 147 to 165 (19 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 246 to 271 (26 residues), see Phobius details amino acids 290 to 314 (25 residues), see Phobius details amino acids 320 to 340 (21 residues), see Phobius details amino acids 351 to 379 (29 residues), see Phobius details PF03594: BenE" amino acids 6 to 380 (375 residues), 528.4 bits, see alignment E=5e-163 TIGR00843: benzoate transporter" amino acids 10 to 378 (369 residues), 318.2 bits, see alignment E=3.9e-99

Best Hits

Swiss-Prot: 35% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to vco:VC0395_A1556)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>CSW01_09835 benzoate transporter (Vibrio cholerae E7946 ATCC 55056)
MMKGFFNLSHLSAGFTTVLVGYTSSVVIVIQAATASGANPTQIESWLLTLGVVMGLTSIL
YSWFYKTPIVTAWSTPAAVMLAASAGQYSLPVVIGAFMFSGALFTLTGMLAPLTRALSKI
PVPLGTAMLGAILLPFCAKAFTPLTDTPALFALLFTSYLLAKHLVPRYTMLVLLLVSLGS
ALALGSFQHADLALRIATPIWVMPEFDWLAILNLALPLYLITMLSQNLPGIAMLKSYQYD
APIKPILVGTGLATLMSAPFGGFSVNLAAISAAICMNEDVDQDKAQRYRAVLWAGGFYLL
AGIFAALVVNLFLALPKPISAMLAGLALLGTLMMCLQSAFKIDEYREPALLTFVITLSGA
TLFGMSATLIGLVIGLAYLRLTTRPRP