Protein Info for CSW01_09825 in Vibrio cholerae E7946 ATCC 55056

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 684 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 332 to 352 (21 residues), see Phobius details PF00672: HAMP" amino acids 351 to 403 (53 residues), 42.4 bits, see alignment 7.4e-15 PF00015: MCPsignal" amino acids 484 to 649 (166 residues), 127.8 bits, see alignment E=4e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1891)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (684 amino acids)

>CSW01_09825 methyl-accepting chemotaxis protein (Vibrio cholerae E7946 ATCC 55056)
MSSGKYDGLEDSFMRVKTKILVTFSVVGILVTALGIWTIKTMYSSSSGLSYIVGPAWDTA
DGAMETTIQIEAQMLAVNRLILGEDSQRVEQILNTAITDVDTSSSRMIEAGLLSAAQTQQ
FSQFNSQYQQSRNTLITSYKNYIETKKSYDKATQVLVDFGEKLETLGDSAVEELEREPNR
NITWQSDVMERWQAADGGMESNIGLLWKLYYTQRLLDGQDDATQIKAIEQAIGFQKQANS
EMFSTGRFTISAGEEWKNASYEEVFSQLNSQHEQAMMAVIESYRNYRQIYQEYTVTSLAL
LDFIAELEELADSKVEQQAVLILDGQAWAISSFKVLIIIALLVLLLLGWILVNQILSPIQ
RLQERVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEKIQNLIADITQSTNLAKTAA
VDLSATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDKNAQSTL
SNVRQAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADINGIAEQTNLLALNAAIEAA
RAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTE
ITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSAQEKIQQ
SEHTISALKLKQEDLALKMSKFKI