Protein Info for CSW01_09705 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 207 to 224 (18 residues), see Phobius details amino acids 236 to 254 (19 residues), see Phobius details amino acids 276 to 301 (26 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details PF10129: OpgC_C" amino acids 3 to 361 (359 residues), 288.8 bits, see alignment E=5.8e-90 PF01757: Acyl_transf_3" amino acids 5 to 354 (350 residues), 43.8 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A1530)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>CSW01_09705 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MKRIPALDSIRGLLLVLITFNHLIWYSGGTTILQMITHEPVGVFGAAEGFIFMSGLLAGM
VYSRREYTDRQAAGKVWHRAFIIYKYHIAGLFIAMLWFWLGSHYFAEQVTVFGGSFSNLP
TMPFMTMLMSFLLLNKPAYLEILPLYIMYMLLFPLALYGFRRGYLKWVLALSVLIWASSG
WIQGAMLLPLFKWLSAEYIPELGYFDPFAWQLLFFFGGALGYCKRQGELAWFHPKLVWLC
AAIALVIFMAYRDLLTPLGITKQMVYAASSKPELGWLRVLSLSVWIYLISVVIRFFPTAL
VYEPLSYLGRHSLQVFTWQTVLIFITAPWLLTTRDSVWHTAIILLLCTTLWIPAWLQTQR
KEKPINLSSAVVACLSLVLVMTTNFTSFPQPPKSDIVASSDEVVTDALPSSEISNHELLS
EPMNSDETPVN