Protein Info for CSW01_09415 in Vibrio cholerae E7946 ATCC 55056

Annotation: DNA internalization-related competence protein ComEC/Rec2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 752 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 34 to 49 (16 residues), see Phobius details amino acids 56 to 73 (18 residues), see Phobius details amino acids 234 to 255 (22 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 321 to 351 (31 residues), see Phobius details amino acids 364 to 393 (30 residues), see Phobius details amino acids 396 to 396 (1 residues), see Phobius details amino acids 398 to 427 (30 residues), see Phobius details amino acids 447 to 469 (23 residues), see Phobius details amino acids 475 to 493 (19 residues), see Phobius details PF13567: DUF4131" amino acids 30 to 177 (148 residues), 47.9 bits, see alignment E=1.9e-16 TIGR00361: DNA internalization-related competence protein ComEC/Rec2" amino acids 132 to 718 (587 residues), 407 bits, see alignment E=1.3e-125 PF03772: Competence" amino acids 213 to 469 (257 residues), 200 bits, see alignment E=7.6e-63 TIGR00360: ComEC/Rec2-related protein" amino acids 235 to 407 (173 residues), 85.1 bits, see alignment E=6.9e-28 PF00753: Lactamase_B" amino acids 503 to 686 (184 residues), 80.3 bits, see alignment E=2.9e-26

Best Hits

KEGG orthology group: K02238, competence protein ComEC (inferred from 100% identity to vco:VC0395_A1470)

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (752 amino acids)

>CSW01_09415 DNA internalization-related competence protein ComEC/Rec2 (Vibrio cholerae E7946 ATCC 55056)
MAYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFV
AAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNK
MTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTA
YQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAI
SGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLL
NVALIMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVW
WKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWP
SVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLL
LGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPM
LQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSL
HFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSEVMI
VPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQI
SLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE