Protein Info for CSW01_09375 in Vibrio cholerae E7946 ATCC 55056

Annotation: YfbU family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 PF03887: YfbU" amino acids 1 to 166 (166 residues), 243.3 bits, see alignment E=6.8e-77

Best Hits

Swiss-Prot: 100% identical to Y1871_VIBCH: UPF0304 protein VC_1871 (VC_1871) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K09161, hypothetical protein (inferred from 100% identity to vco:VC0395_A1462)

Predicted SEED Role

"FIG00920830: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (166 amino acids)

>CSW01_09375 YfbU family protein (Vibrio cholerae E7946 ATCC 55056)
MEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPETECR
EIIDIMEMYHAMQESNRMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSEGLYP
QFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLSGNELRQIMNA