Protein Info for CSW01_09345 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF3360 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 66 to 88 (23 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 144 to 171 (28 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details amino acids 443 to 465 (23 residues), see Phobius details amino acids 487 to 507 (21 residues), see Phobius details PF11840: DUF3360" amino acids 12 to 517 (506 residues), 1017.6 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1788)

Predicted SEED Role

"FIG01200042: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>CSW01_09345 DUF3360 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MRNHMSDVMNKERSDIETKSYRELHRPASEFATRSEYLDHELQIMKPRRFGLNLPGRDFR
FELEDLVPALAGTIGIISMYSAVMMSWADGLTQAWDHINLGKEFAIEVARVEMLFPALFF
CVIASGFLNPRANLAGNHGPMIPLIGSIALAGAHPLALAILLGVFGLLLSYFKGGSKLVN
LTSEGTAGGLLIFLGFTGTMSQITSIQEWAVGLQSADVAAGSMGYIGLVVLGVNIVIYAL
LAKFNLRWLAIPVCAFTGLVIALALGAGFDLKFETQMGLPNLNPVYWWGSTEQGWMLGMP
TLQHFIASLPFAILAVAMWSPDFLGHRIFQELNYPKRTEKVLMDVDDTMTMCSIRQMVGT
ALGGGNITSSWGTYMIPAAIAKRPIPGGAIILGCLVMTIAILGFPMDAAVWPPVMRCALL
VGVFLPLLEAGMQMIKNTKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAAK
LSFIDKVVIPGGVLIICLIAMLAVGMLESQYGLQAWL