Protein Info for CSW01_09275 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF17775: YchJ_M-like" amino acids 28 to 124 (97 residues), 101.9 bits, see alignment E=3e-33 PF02810: SEC-C" amino acids 134 to 151 (18 residues), 33.9 bits, see alignment (E = 2.3e-12)

Best Hits

Swiss-Prot: 100% identical to Y2643_VIBC3: UPF0225 protein VC0395_A1443/VC395_1967 (VC0395_A1443) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 100% identity to vcj:VCD_002524)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (151 amino acids)

>CSW01_09275 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MSCYCGNTQPYSQCCEPIHLNPHSAQVPEQLMRARFSAHILKNVEFVIETYHPSCQASNE
RDAISESVHSHWLRLEIISTQMGATPNEGFVHFKAFLDQEGKVFCLEERSRFLKENNCWF
YIDGEFPAAIKQGRNDPCACGSGKKYKKCCG