Protein Info for CSW01_08860 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF262 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 PF03235: GmrSD_N" amino acids 14 to 230 (217 residues), 112.7 bits, see alignment E=2.6e-36 PF07510: GmrSD_C" amino acids 512 to 654 (143 residues), 76.3 bits, see alignment E=2.3e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1704)

Predicted SEED Role

"FIG01200742: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (663 amino acids)

>CSW01_08860 DUF262 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MGDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFI
GTILSSRIEQDGERIYELIDGQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPR
LQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMGVALDVLTKEVEKLKSDDGVS
AEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY
DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAE
LASQVKASSIPDNTEQEKFETYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPR
LHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVVKWVERDDATDAQLGLTYQSR
SKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL
ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIW
KKMKASESSLPSEELNKFKKYRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPG
ENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLWGKQQIDNHLEDMMAVFAQHY
KHQ