Protein Info for CSW01_08620 in Vibrio cholerae E7946 ATCC 55056

Annotation: chromosome partition protein MukB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1491 PF04310: MukB" amino acids 2 to 227 (226 residues), 411.9 bits, see alignment E=1.5e-127 PF13555: AAA_29" amino acids 8 to 55 (48 residues), 34.5 bits, see alignment (E = 2.8e-12) PF16330: MukB_hinge" amino acids 646 to 811 (166 residues), 245.3 bits, see alignment E=5.5e-77 PF13558: SbcC_Walker_B" amino acids 1337 to 1425 (89 residues), 43 bits, see alignment 9.1e-15

Best Hits

Swiss-Prot: 59% identical to MUKB_AGGAC: Chromosome partition protein MukB (mukB) from Aggregatibacter actinomycetemcomitans

KEGG orthology group: K03632, chromosome partition protein MukB (inferred from 72% identity to vsa:VSAL_II0727)

Predicted SEED Role

"Chromosome partition protein MukB" in subsystem DNA structural proteins, bacterial or MukBEF Chromosome Condensation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1491 amino acids)

>CSW01_08620 chromosome partition protein MukB (Vibrio cholerae E7946 ATCC 55056)
MIERGKYQSLTMINWNGFFARTFDIDNLVTTLSGGNGAGKSTTMAAFITALIPDQSLLHF
RNTTEAGSSQASRDKGLYGKLQAGACYAALDVVNSRNQRLLFAVKLQQVAGRDKKVDIKP
FLIQGLPSHVKPTDVLVETVSDKHARVRQINEVKDAVGQIEGAHFKSFPSIVDYHAQMFE
FGVIPKKLRNSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPQNGGVKKAFQDMESALR
ENRMTLEAIKTTQADRDLFKHLITESTNYVAADYMRHANDRRNKVGQTLVLRGELFSSRE
TLIEQNSLLNRVHEELELLVEQESALEQDYQGASDHLQLVQNALRQQEKIERYQEDLEEL
NFRLEEQMMVVEEANERVMQAEERAIISEEEVDSLKSQLADYQQALDVQQTRALQYQQAV
QALDKARRLLDKSELTAESAQALATQLKAEQETRTSELLALKHKLDMSSAAAQQFNHAFE
LVKRVLGEVARSEAAKQAQQVIRQAREAQNVVQNEAQWQAQQRDLERQLEQQRSVRELAT
QYHKQHRVVLDDAATVELERERHSALLEELETEQENCREQRGQLRHQEQELQTQIARFES
IAPAWIKANDALETLREQSGAELADSQSVMAHMQQVLELEKAQSMAKDKLAERRTKLDSE
IERLASPGGSNDPRLKGLADTLGGVLLSEIYDDITIDDAPYFSAMYGPARHAIVVSDLSG
IKEKLVELDDCPEDLYLIEGDVDAFDDSSFNAEELEGAVCVQLNQRQMRYSRFPAIPLFG
RAAREQRLELLREERDDVVEQHAKASFDSQKLQRLYASFNQFVAMHLQVAFDADPEQALA
TARDKRNQLLRSISEFEAQEQQLRSQLQASKQALAALDKLAPQMGLLDEETLEARYHELE
EKLQQLSEAKAFIAAHGRTISELEKVAAVLDADPEQFDALEQQYQQADQALQQLKAQIFA
LSDLLERRHHFAYSDSVDLLNQSSELSEQLKAKLVQAESERTRSREELKQAQAQLSQYNQ
LLASLKSSHQAKLETVQEFKQELQEFGVHADEGAIERAQRRRDELQERLHTSRSRKSEYE
RTITSTELEMKALVKRMKKVEKDYQDLRTFVVNAKAGWCSVLRLARQNDVERRLHKRELA
YLSADELRSMSDKSLGALRLAVANNEDLRDALRQSEDNSRPERKVLFYIAVYQHLRERIR
QDIIRTDDPVEAIEEMEVELARLTEELTQREQRLAISSDSVASIIRKTIQREQNRIRMLN
QGLSNISFGQVNGVRLNVKVRESHEILLAGLSEQQAQHKDLFESARYTFSEAMAKLFQRV
NPHIDMGQRSPQVLGEELLDYRNYLELSVEVNRGSDGWLQAESGALSTGEAIGTGQSILL
MVVQSWEEESRRLRSKDIVPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENIS
PEKGTTYKLVRKVFKDHEHVHVVGLRGFAQTEKPKTAEQKFAEELAGELTE