Protein Info for CSW01_08515 in Vibrio cholerae E7946 ATCC 55056

Annotation: trimethylamine N-oxide reductase system protein TorE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 60 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details PF06796: NapE" amino acids 5 to 55 (51 residues), 92 bits, see alignment E=6.8e-31 TIGR02972: trimethylamine N-oxide reductase system, TorE protein" amino acids 8 to 57 (50 residues), 103.2 bits, see alignment E=2.2e-34

Best Hits

KEGG orthology group: K02571, periplasmic nitrate reductase NapE (inferred from 100% identity to vco:VC0395_A1298)

Predicted SEED Role

"Periplasmic nitrate reductase component NapE" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (60 amino acids)

>CSW01_08515 trimethylamine N-oxide reductase system protein TorE (Vibrio cholerae E7946 ATCC 55056)
MSDVNKVESGEKRSLEWKSFLFITVVLFPILSVAFVGGYGFIVWMLQMFVFGPPGLHGGF