Protein Info for CSW01_08285 in Vibrio cholerae E7946 ATCC 55056

Annotation: SgrR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 PF12793: SgrR_N" amino acids 6 to 119 (114 residues), 94.4 bits, see alignment E=5.6e-31 PF00496: SBP_bac_5" amino acids 164 to 374 (211 residues), 78.8 bits, see alignment E=4.5e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1586)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>CSW01_08285 SgrR family transcriptional regulator (Vibrio cholerae E7946 ATCC 55056)
MSDLNLLRYYARLTPLGVGHDIKTTLPELAERLFTSPRHARNLLVRLNQLGWLTWTPKAG
RHHRSSLLLHRELEPLKEQLAAKRVQIGKYERALAILDNDEVAFAKLLKKTSGATVQEGR
LHIQLTYKRPFEPLLPHLPQRSSERFLIRQIYSCLVSSDANGHVHPELAHHWHYDPHTWQ
WTFYLRPELTFHNGAPLDANTIVSLFAKLSSLETHRAELAHISDIKAPTPFQVVFNLERP
DPGFAGMISGVKYAIQPVSQLNYSQFHEGQIVPVIGCGPFEVQEHTRNKLKLKAFSQFYG
CRALTDRVTIWQVDEERLSRPLIETNQPEANTTSHHQVSLSDSPHLTSAAQQQSRVEDGC
LMVLFNQRAKQPLDQAQAHRLSELLNPNTIEQDIRCHGEMFGVEPAHNLLPSWRAVLKSP
APKVALPTQLTLALYNYTALQTCAQAIARLLAAQGITLSIHTYTYRELNQRALKGELDET
LVLTNINLDDNRHASAFAMLFSNPILHACASQDEVIWLMQQLNAVREQAQLPQYLDQLEP
IASLLVSESWLAPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD