Protein Info for CSW01_08205 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF2867 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 449 to 468 (20 residues), see Phobius details PF05368: NmrA" amino acids 2 to 149 (148 residues), 32.9 bits, see alignment E=1.1e-11 PF01370: Epimerase" amino acids 4 to 114 (111 residues), 32 bits, see alignment E=1.7e-11 PF13460: NAD_binding_10" amino acids 8 to 149 (142 residues), 41 bits, see alignment E=4e-14 PF11066: DUF2867" amino acids 335 to 467 (133 residues), 57.9 bits, see alignment E=3.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VC1632)

Predicted SEED Role

"Predicted nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>CSW01_08205 DUF2867 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MKKVLVLGASGYVGAQLLPLLLNAGYHTTAASRHIETLHARLPTHPNLTRLTLDLADRQK
TLATIPNYDLVFFLVHGMAHGGDFVDYELSLAQNVNDALDLAHSQVQHVIYLSSLQPESG
RSPHLQARYATGQILRQSRIPITELRAGVIIGPGSAAFEIMRDFVYNLPVLITPKWVDSQ
ANPIALANLNTYLLKFAEEQPKMHQTFELGGPDILSYREQFQILCELTGKPYRLWSTRFL
TPSMAARWLGMVTSVPSSIGRSLLEGLTHDFIADTQAIEARYPQPLIAYREAVKAAISSE
GTFVRSQVWGFDPHAIVRWQPGFGYYPKQAGASIETELSSHALWKVIRTIGRRDQGYFFA
NILWRTREWLDVLFGGGKPIRRYPAGAELAVGDYIDSWKVIRCQPQQFLSLLFGMKGPGL
GRLEFTIDDLGDKRRLNVTAWWHPQGFLGLMYWYAMMPAHLFIFRGMVKAIIKKSRRD