Protein Info for CSW01_08135 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 276 to 298 (23 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 352 (337 residues), 166.4 bits, see alignment E=4.5e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VC1618)

Predicted SEED Role

"possible efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>CSW01_08135 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MIELHSPQYLKVTFALAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALS
LCLVPWAVTSEAVGRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVA
VAYMVEELSPQAFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGAL
LVAYLLPIQQHFKPQRGLFFHHNRALVKHLQNRTLWLAMLIGGVNFALFVNLYSVMGFRL
VAEPYSLPIGIASLIFVCYLAGTLSSKLTANWNRRFSAIPGMMLGALISMAGMLIALIEA
IPAMLVGLILISFGAFFTHTLAYAWVSQKATQAKATATALYLVHYYIGGSLGGFYLLYCW
QHGGWEMVTLGGLGLYFILFILGWRLSRQNKQTPQGSQALASPSA