Protein Info for CSW01_07880 in Vibrio cholerae E7946 ATCC 55056

Annotation: cytochrome ubiquinol oxidase subunit I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 125 to 147 (23 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 352 to 373 (22 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 7 to 429 (423 residues), 538.2 bits, see alignment E=5.8e-166

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 100% identity to vcm:VCM66_1511)

MetaCyc: 45% identical to cyanide insensitive ubiquinol oxidase subunit I (Pseudomonas putida KT2440)
RXN-6883 [EC: 1.10.3.11]

Predicted SEED Role

"Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases (EC 1.10.3.-)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 1.10.3.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>CSW01_07880 cytochrome ubiquinol oxidase subunit I (Vibrio cholerae E7946 ATCC 55056)
MLDTLMLSRIQFAANISFHILFPTITIALGWILVFFKWRYLRTQVSEWLDLYYFWVKVFA
LTFALGVVSGITMSFQFGTNWPGFMERVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGR
VPEWLHTLSTVLVAVGTSLSAFWILVLNSWMHTPAGYEVIDGVVHVTSWKEVIFNPSMPY
RLAHTLLASALTASFLIAGISAYQVLRNAKHQAAKMGLKVAVSVAALAIPVQILVGDLHG
LNTLEHQPAKIAAMEGVWQTERGAPLLLFALPNEETRSNDFALGIPNLASLILTHDMNGE
IVGLDAFAPDHPPVAPLFFGFRVMVGVGVLMLLVSWFGAWRVWRNKPLPKPYMYALIGMT
FSGWVATIAGWYVTEIGRQPWLVSGVLRTAEAVTPVASSSVGISLTLYLITYVVLLVAYV
HTLFYLARKTGHAPQVSPSSTKAAL