Protein Info for CSW01_07875 in Vibrio cholerae E7946 ATCC 55056

Annotation: cytochrome BD ubiquinol oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 146 to 170 (25 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 253 to 275 (23 residues), see Phobius details amino acids 295 to 317 (23 residues), see Phobius details PF02322: Cyt_bd_oxida_II" amino acids 5 to 320 (316 residues), 274.7 bits, see alignment E=5.2e-86

Best Hits

KEGG orthology group: K00426, cytochrome bd-I oxidase subunit II [EC: 1.10.3.-] (inferred from 100% identity to vco:VC0395_A1174)

Predicted SEED Role

"Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases or Conserved gene cluster associated with Met-tRNA formyltransferase or Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases (EC 1.10.3.-)

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>CSW01_07875 cytochrome BD ubiquinol oxidase subunit II (Vibrio cholerae E7946 ATCC 55056)
MMQYLPEIYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQRDRMIASIGPFWDANETWL
VLAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKI
GSLLAALTQGYMIGRYVVGFESAPEAYAFAVLSALCVAAAYVYIGGAWLVLKTEGELQVR
AARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVVDRY
LKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMVVGI
GVVIVMPTILLYTFFVYRIFKGKATDLSYL