Protein Info for CSW01_07860 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 276 to 300 (25 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details PF12704: MacB_PCD" amino acids 19 to 238 (220 residues), 99.2 bits, see alignment E=4.1e-32 PF02687: FtsX" amino acids 282 to 396 (115 residues), 58.5 bits, see alignment E=7.3e-20

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to vcj:VCD_002810)

Predicted SEED Role

"ABC-type antimicrobial peptide transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>CSW01_07860 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MRLLLQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQM
VASGQTSEVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENREVSITQQRGTAIGSM
VSGVDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAATSQLKIGDEFKIRGIAF
RVIGIMDDESSRFSFGDNQKVFIPSSTFKDIWDTQPNMMLVLPAQGVSSWALREQLRHTF
AQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILGVANMMFLAV
TERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAYFGVLLLNHLGLPTWLG
EPVITSTTVWLSMLVTSILALAAAYFPARRAAQLEPVIALSSRS