Protein Info for CSW01_07535 in Vibrio cholerae E7946 ATCC 55056

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 62 to 83 (22 residues), see Phobius details amino acids 85 to 96 (12 residues), see Phobius details amino acids 109 to 137 (29 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details amino acids 304 to 332 (29 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details amino acids 383 to 400 (18 residues), see Phobius details TIGR00155: integral membrane protein, PqiA family" amino acids 17 to 410 (394 residues), 346.9 bits, see alignment E=8.7e-108 PF04403: PqiA" amino acids 63 to 213 (151 residues), 129.8 bits, see alignment E=4.4e-42 amino acids 257 to 411 (155 residues), 167.6 bits, see alignment E=1e-53

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to vcj:VCD_002874)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>CSW01_07535 paraquat-inducible protein A (Vibrio cholerae E7946 ATCC 55056)
MCCPPMTSSSSLSHHASQSGQVRLCPGCELPIDAITVDQAHSAHCPRCGTLLYRGGSPSL
SGDLALAVTCLLLFIPSHFFSYIDIRLFGVMIPATLPQGVFALWDEGYIALALLVLFCSS
IAPLVLCLSVVSAHLALRFRYFQTLRYSLLFIHHLKVWVMIDVFLVSVAVSCFKLKDYSD
IFIGPGLLGLVLLQLFTVLLLSRISTRRYWETWQAETEYDLPVKQVHCHNCHLSQPENGH
CVRCQHKLYHRKPNSIERTWAYVLAATVAIFPANLIPISILITNGQRLEDTIFSGVASLV
KNGMWGIALIIFVASIVVPVIKIIGLAYLLMAIKLKRHVHQRQRMMIYRGIKWIGKWSVM
DLFVISIMLTLVDRGQILDFTPGYGAVAFGMVVVLTMLAAESLDPRLLWDEPDSTRTQQ