Protein Info for CSW01_06755 in Vibrio cholerae E7946 ATCC 55056

Annotation: acetate--CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 PF16177: ACAS_N" amino acids 4 to 56 (53 residues), 64.4 bits, see alignment 1e-21 PF00501: AMP-binding" amino acids 65 to 447 (383 residues), 254 bits, see alignment E=3.4e-79 PF13193: AMP-binding_C" amino acids 510 to 589 (80 residues), 96.7 bits, see alignment E=1.9e-31

Best Hits

Swiss-Prot: 60% identical to Y3568_PSEAE: Uncharacterized protein PA3568 (PA3568) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K01908, propionyl-CoA synthetase [EC: 6.2.1.17] (inferred from 100% identity to vco:VC0395_A0956)

MetaCyc: 58% identical to propionate--CoA ligase (Ruegeria pomeroyi DSS-3)
Propionate--CoA ligase. [EC: 6.2.1.17]

Predicted SEED Role

"Propionate--CoA ligase (EC 6.2.1.17)" in subsystem Methylcitrate cycle or Propionate-CoA to Succinate Module (EC 6.2.1.17)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.2.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (625 amino acids)

>CSW01_06755 acetate--CoA ligase (Vibrio cholerae E7946 ATCC 55056)
MSAYQEQYQWAKEQPEAFWRKQAQQIDWFQPPQTILANDEHGIERWFPDGVLNTCWLALD
YHCEQGRGDHTALIYDSPVTGKKQRYSYSALRDSVAKIAGMLAAQGVSKGDRVIIYMPMI
PEAAMAMLACARLGAIHSVVFGGFAPNELAVRIEDAEPKVIMTASCGVEINKVIPYKPMV
DKAIMDSRWKPEKVLVYQRSECRAELTHARDLEWNTVVQSATPHGCVPVLATDPLYILYT
SGTTGKPKGVVRDNGGHAVALKYSMQIIYNMPQDGVFWAASDVGWVVGHSYIVYAPLIHG
CTTILYEGKPVRTPDPGAFWRVCQEYQVTALFSAPTAFRAIKKEDPNGDYLKKYDLSALT
TIFMAGERLDPPTLEWVQSKTGKPVIDHWWQTETGWAIAGNPTGLESMPIKAGSATKPIP
GYQVEILNELGENMPANQQGFVALKRPLPPSCLPTVWRNHDRFESGYLAQFPGYYVSGDG
GYLDDDGYLFIMGRIDDVINVAGHRLSTGEMEEIVGAHPAVAECAVIGVHDELKGQLPLG
LVVLKDGVKIDAQTLEQELVASVRNQIGAVACFKHAIVVERLPKTRSGKILRRIIRQIAD
GESYTIPSTIDDPMSLNELENLFQH