Protein Info for CSW01_06715 in Vibrio cholerae E7946 ATCC 55056

Annotation: tripartite tricarboxylate transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 transmembrane" amino acids 18 to 47 (30 residues), see Phobius details amino acids 52 to 53 (2 residues), see Phobius details amino acids 55 to 82 (28 residues), see Phobius details amino acids 107 to 133 (27 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 200 to 223 (24 residues), see Phobius details amino acids 261 to 285 (25 residues), see Phobius details amino acids 322 to 348 (27 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details amino acids 419 to 449 (31 residues), see Phobius details amino acids 474 to 493 (20 residues), see Phobius details PF01970: TctA" amino acids 18 to 444 (427 residues), 512.9 bits, see alignment E=3e-158

Best Hits

KEGG orthology group: K07793, putative tricarboxylic transport membrane protein (inferred from 100% identity to vcm:VCM66_1287)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>CSW01_06715 tripartite tricarboxylate transporter permease (Vibrio cholerae E7946 ATCC 55056)
MLDGILQGLATAVMPTNLMMVMIGCFVGTFIGMLPGLGPISAIALMIPITYGLEPASGLI
LMAGVYYGAIFGGSTSSILINAPGCSSTVVTAFDGYPMAQKGQAGKALALAAYASFTGGT
LSAIMLLFAAPALAKVSLSFQSSDYFALMLVGLSAVAAFAGKGQVIKAWMMTVLGLMLST
VGIDKGIGVERFTFGLTDLMDGFSFLLLAMATFALGETLMGILKPDADNSANEQEQMKNI
GSMKLTKEEVKEAAPVSLRSSILGFFTGVLPGAGATIAAFLAYGMERNLAPKAKKEEFGQ
GSLRGLVAPESANNAASSGSFVPLLTLGIPGSGTTAIMLGALIAYGIQPGPRLFVDHPDI
FWSVIISMYVGNIVLLILNLPLIPYISKLLAVPRTVLLPMILFFSITGVYLVSFNTMDVY
VMILVAMGAIALRLANFPLAPLLLGFILGGLMEENLRRALIITDGEISFLWERPITLAFT
VLAIVTLLSPLFGRLMERKKRPTGAKLPH