Protein Info for CSW01_06635 in Vibrio cholerae E7946 ATCC 55056

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 50 to 67 (18 residues), see Phobius details amino acids 74 to 96 (23 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 179 to 195 (17 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 288 to 305 (18 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details amino acids 399 to 417 (19 residues), see Phobius details amino acids 423 to 442 (20 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 22 to 479 (458 residues), 148.4 bits, see alignment E=3.6e-47 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 52 to 479 (428 residues), 251.3 bits, see alignment E=7.8e-79 PF03600: CitMHS" amino acids 63 to 418 (356 residues), 140.3 bits, see alignment E=8.8e-45

Best Hits

KEGG orthology group: K14445, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 (inferred from 100% identity to vco:VC0395_A0932)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>CSW01_06635 transporter (Vibrio cholerae E7946 ATCC 55056)
MPAPRQTHNRFSGRVNMMRPYLKYIIPLLIPMLVLMLPATAFPFEGLTVIQQRVIAIFLL
AALLWVFEPIPIYSTSVVIIVLEVLMLSDKGFILFRLGEGTSEFGALLKSTEIMATFANP
IIMLFLGGFFLAMAATKYRLDVNLARVLLKPFGNNPKYVMLGLMMITAVFSMFMSNTATT
AMMLSILTPVIAVFGPKDPGRVAFALCIPVAANIGGIGTPIGTPPNAIALKYLVGDNLIT
FAEWMAFGIPFVVILMALAWLLIEFMYRAEQKTIELTIKGKFLKTPKAIIVYITFASTIL
LWMLGSLHGMNSYSVALIPVAVFSVTGIIGKEDLKMISWDVLWLVSGGIALGLALDKTGL
AELVVHSIPFDQYSPYVVILGAAILCLLMANFMSHTATANLLMPIMAALGASMTPLNPLG
GEVTLILVVTFAASLGMSLPISTPPNALAHATRNVQSQQMAKVGIILGIFGVLMSFVMVW
ILNMVGH