Protein Info for CSW01_06400 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF1513 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF07433: DUF1513" amino acids 67 to 359 (293 residues), 406.7 bits, see alignment E=2.8e-126

Best Hits

KEGG orthology group: K09947, hypothetical protein (inferred from 100% identity to vcm:VCM66_1222)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (360 amino acids)

>CSW01_06400 DUF1513 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MQPMVTDATRRHLLQVALFGCTTPWLISGCSSARSPQPALIGCAIEGRERFSVVMADNAG
QAVGKLALPARGHGIAIHPTLPHAVAFARRPGQFMSVFDYQTAQQIVLRPADTQRHYYGH
GVYSHDGRYLYATEGGQKTSRGVIGVYDVTHHYQKVAEWSGFGIGPHEVILMADGRLVVG
VGGVHTFGREPLNLESMQPSLTYLSAQGEVLEQITLPDRHLSIRHLAHDGDNTVLCGQQY
RGQPDDYPPLVAMHTGTGPLKPLQAEPEQWARFNHYIASIAATDEWILATSPPGNCYGIW
SKATGELVELAALADASGVVVRHGAFQISSGSGKIILQSAPELSQSHMSNVMWDNHWSAI