Protein Info for CSW01_06065 in Vibrio cholerae E7946 ATCC 55056

Annotation: isoprenylcysteine carboxylmethyltransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 95 to 124 (30 residues), see Phobius details PF04191: PEMT" amino acids 46 to 142 (97 residues), 36.2 bits, see alignment E=3.6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A0819)

Predicted SEED Role

"Putative protein-S-isoprenylcysteine methyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>CSW01_06065 isoprenylcysteine carboxylmethyltransferase family protein (Vibrio cholerae E7946 ATCC 55056)
MIMKNLELKVPPVAVFLVALALIHLSSILFPTLTITLPWPSLVMALCFCSSGFWGIAGLL
EFRRFKTTVNPMAPDLAATVVDSGVFALSRNPMYLGLLLLLFGLAYWQENALSLVIVGGF
LLYMNQYQIEPEERILEAKFGEAYLHYKKRVRRWL