Protein Info for CSW01_06040 in Vibrio cholerae E7946 ATCC 55056

Annotation: molecular chaperone DnaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 209 to 230 (22 residues), see Phobius details PF08238: Sel1" amino acids 46 to 81 (36 residues), 35.9 bits, see alignment 3.8e-13 amino acids 82 to 117 (36 residues), 30.4 bits, see alignment 2.2e-11

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 100% identity to vcj:VCD_003150)

Predicted SEED Role

"FIG01201011: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>CSW01_06040 molecular chaperone DnaJ (Vibrio cholerae E7946 ATCC 55056)
MTERFIFRERKIMRLRSLWLFLLFSLPLAAADDVTRLTQLAQEQNPQAQYQLALTYQTGS
STPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEKDPLQAQYWLIKLALAGNPQA
GTTLAKWYEQHPTAIAALDLAEIWYRVNANQDPESEQGYARLLEQKFNQQRERQLNSIGQ
LDNLIDRDLARPASALPVNKEAQTITSDWLLPTLVALILLLIIITIRMIWRRQRNHIVAV
KYVDYEGKWKEQQFIIKRQKQQLDHLYQECKRLQQNQTSDLNGQKVAMAYALMGFHQNQR
PDVKMIKLRYKQLSKIYHPDLHGSEEEMKRLNSAVKIVIDSVNKSLQKQA