Protein Info for CSW01_05810 in Vibrio cholerae E7946 ATCC 55056

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 409 to 427 (19 residues), see Phobius details amino acids 448 to 466 (19 residues), see Phobius details amino acids 473 to 497 (25 residues), see Phobius details amino acids 504 to 523 (20 residues), see Phobius details amino acids 535 to 557 (23 residues), see Phobius details PF06826: Asp-Al_Ex" amino acids 17 to 185 (169 residues), 127.6 bits, see alignment E=4.4e-41 amino acids 387 to 554 (168 residues), 150.2 bits, see alignment E=4.9e-48 TIGR01625: AspT/YidE/YbjL antiporter duplication domain" amino acids 21 to 172 (152 residues), 102.6 bits, see alignment E=9.2e-34 amino acids 391 to 542 (152 residues), 124.3 bits, see alignment E=1.9e-40 PF02080: TrkA_C" amino acids 228 to 281 (54 residues), 38.5 bits, see alignment 9e-14 amino acids 307 to 372 (66 residues), 37.3 bits, see alignment E=2e-13

Best Hits

Swiss-Prot: 100% identical to Y1101_VIBCM: Putative transport protein VCM66_1101 (VCM66_1101) from Vibrio cholerae serotype O1 (strain M66-2)

KEGG orthology group: K07085, putative transport protein (inferred from 100% identity to vcj:VCD_003197)

Predicted SEED Role

"TrkA, Potassium channel-family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>CSW01_05810 transporter (Vibrio cholerae E7946 ATCC 55056)
MNIDVVLLLEQNPILLIFVVLAIGLSFGKIRFGSFQLGNSIGVLITSLIMGHLGFSFTPE
ALTIGFMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAYFGGYYLNLDYGL
AAGMMAGALTSTPVLVGAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLISMIMF
AKLLPKLQKQNLSDSAQQIAQERGLGSQRKVYLPIIRAYRVGPELINWIDGRNLRELGIY
RQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHARLDPSFRNGKEVFDRNLLD
LRISEEEIVVKSDSIAGKRLSDLNLSEYGCFLNRVVRAQIEMPMDLDIVLAKGDVLQVSG
EKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVTMTFGQVSFSLGNAVGLLLS
GITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNAGSKMFQHLSEVGVQVIGLA
FLVSVVPVVFAYLVGAYILKMNRALLFGAIIGARTCAPAMDVVNEYAKSTIPALGYAGTY
AIANILMTLTGTIFILLS