Protein Info for CSW01_05455 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 71 (26 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 165 to 193 (29 residues), see Phobius details amino acids 215 to 242 (28 residues), see Phobius details amino acids 248 to 248 (1 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 314 to 339 (26 residues), see Phobius details amino acids 351 to 371 (21 residues), see Phobius details amino acids 376 to 399 (24 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 341 (318 residues), 60.8 bits, see alignment E=5.8e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A0589)

MetaCyc: 71% identical to 1-arseno-3-phosphoglycerate exporter (Pseudomonas aeruginosa)
TRANS-RXN1YI0-17

Predicted SEED Role

"Permease of the major facilitator superfamily"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>CSW01_05455 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFG
VVTNLIGGWLGARLGLNRTMNIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLN
KMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFFLGGALLSLIGFQYAVAAMAA
VLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI
YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTG
LIAYGVQIQWHPEVVIIGGLMLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAM
GRLIGTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLPNRAYTSQVNLK