Protein Info for CSW01_05450 in Vibrio cholerae E7946 ATCC 55056

Annotation: phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF22785: Tc-R-P" amino acids 28 to 131 (104 residues), 42.8 bits, see alignment E=1.3e-14 PF22784: PTP-SAK" amino acids 32 to 133 (102 residues), 27.8 bits, see alignment E=4.8e-10 PF00782: DSPc" amino acids 35 to 149 (115 residues), 35.5 bits, see alignment E=1.6e-12 PF05706: CDKN3" amino acids 35 to 130 (96 residues), 30.8 bits, see alignment E=4.5e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to vco:VC0395_A0588)

Predicted SEED Role

"Predicted protein-tyrosine phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>CSW01_05450 phosphatase (Vibrio cholerae E7946 ATCC 55056)
MTHPTWELPVADNQASLVLTPCPGTKGTPLPESIAQLKAQGVSAVVTALSHEEMEQHGVG
ELPAEVEKAGLQWFHAPIEDDCAPDAAFAQDWQHCSPALHQALSRGEKVALHCMGGSGRT
GLLAAHLLLEKGWPLESIITQVQALRPGAFTKEVQVQYVHQIVKP