Protein Info for CSW01_05165 in Vibrio cholerae E7946 ATCC 55056

Annotation: electron transport complex subunit RsxC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 TIGR01945: electron transport complex, RnfABCDGE type, C subunit" amino acids 40 to 474 (435 residues), 666.4 bits, see alignment E=7.4e-205 PF13375: RnfC_N" amino acids 41 to 143 (103 residues), 118.7 bits, see alignment E=3.6e-38 PF01512: Complex1_51K" amino acids 167 to 310 (144 residues), 169.4 bits, see alignment E=1.7e-53 PF10531: SLBB" amino acids 323 to 372 (50 residues), 26.6 bits, see alignment 1.6e-09 PF13237: Fer4_10" amino acids 401 to 455 (55 residues), 27.9 bits, see alignment 6.4e-10 PF00037: Fer4" amino acids 401 to 417 (17 residues), 23.5 bits, see alignment (E = 1.3e-08) PF13183: Fer4_8" amino acids 404 to 458 (55 residues), 30.3 bits, see alignment 1.8e-10 PF12838: Fer4_7" amino acids 405 to 457 (53 residues), 36.3 bits, see alignment 2.2e-12

Best Hits

Swiss-Prot: 100% identical to RNFC_VIBCH: Ion-translocating oxidoreductase complex subunit C (rnfC) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03615, electron transport complex protein RnfC (inferred from 100% identity to vcj:VCD_003323)

Predicted SEED Role

"Electron transport complex protein RnfC" in subsystem Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (801 amino acids)

>CSW01_05165 electron transport complex subunit RsxC (Vibrio cholerae E7946 ATCC 55056)
MATQCHPCGQCDRFCACCAEKCELRMGMLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQP
IINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAI
EPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGISGMGGAGF
PTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIG
IEDNKPEAVAALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMV
QNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKL
PRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLL
PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEA
AERAKARFEEKKARMERDKAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQL
EPTDNSVKPAIAAAIARAKAKQAEAAQSGASEPDNSEMAKLREERKRQARERKAQKGEVT
EASTSDGADDKKSAVAAAIARAKARKAEQQETESAAQPAQATPSSDDADPKKAAVAAAIA
RAKARKAEQQETESTAQPAQATPSSDDADPKKAAVAAAIARAKARKAEKQETESAAQPTQ
ATPSSDDADPKKAAVAAAIARAKARKAEQQETESAAQPTQATPSSDDADPKKAAVAAAIA
RAKARKAAQQSSSNLNAEEKD