Protein Info for CSW01_05085 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1621 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details transmembrane" amino acids 290 to 312 (23 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 88 to 160 (73 residues), 85.4 bits, see alignment (E = 1.8e-28) TIGR03504: FimV C-terminal domain" amino acids 1575 to 1617 (43 residues), 56.3 bits, see alignment (E = 2.5e-19)

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 100% identity to vcm:VCM66_0954)

Predicted SEED Role

"Beta-glucosidase (EC 3.2.1.21)" in subsystem Beta-Glucoside Metabolism or Fructooligosaccharides(FOS) and Raffinose Utilization (EC 3.2.1.21)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.21

Use Curated BLAST to search for 3.2.1.21

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1621 amino acids)

>CSW01_05085 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MDPIYLTNLRTSKFKAHTEPFMRRFFQRLLLPVAVMVVTQTSFVSAESIRLVGPDGQVQP
TPQYSENIVRNSANNEPGRFFGPTSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQAF
ENQNIHTLIPGSTLRVPSLAQISRNSTQDAVNIMASHQAKLNQTPDTPVRPVAPPRPAPV
ATPKVEAVAQTPPQVTPTTAPQEKAPTELKTPAKPSQSTDAEVMALEEKNHTLRLMLSQV
QSEVSTLKEELGDENRIRSEVERLLEEERRKAEEASRLAPSALDNLLSNGWLVALLALIP
GLLIAIVVLLLLNRRSSAQQENPTQNNITSEMPTAAPVTLGPEQTEDIGDDLLLDDDLFS
TTDDKEENDAEKAFSDEDDVFADLNETDLDFNLDGQDSDDLFVGIDDDGDLDTEFDALNE
SANGISVNADDKALGLEEMERALNDVSEPTDNDDLNSFDLADENQMSEDDIEALLSGDEE
NELLSDGKVDQSLLDDLLASELDALDDEPAIQDTETLDTLLNDELASLSEEDDDEFDLSG
AGVAGDQDLDDLFASIEEQADLEQLEAKAIDETALLDEILAEQDAPLSEESTELLDELLD
DFDKPENDEFDAQTADLLQPEEPILDLEEDSTQLLNEVLGEPVPEELASGLEIDQNSTEL
LDELLDDLDLDDESIEATEFSVAPEKLSVEDGTELFDELLEIEQHPESAESLPELATEDE
FNSDTFIDDLLNSAPAKDPLLEPVLDENEAFAQADDFDFNPEIEGGLEDDLSQPSALPAN
EFGTPQDEDWVFDEDDSSPTLEGNAELELSSAEDDLPEQTTATNETADELLADLAAQPQS
NTVDTSDDALAPDGLSQSVEEPLTLNDLELPEENDEPQLAEVTPSSAFDEQQVETEIEPE
SEPLAAEASNDESDLTALNELDLPEYTEEDVLADVQLEPAAESEVEPDLELVNEPVTEEA
FTELDELDLPEYTEEDALADAQLEPVAESEVEPELDLASEPAEEEAFTELNKLDLPEYTE
EDALADAQLESATESEVESELELVSEPAAEEAFTELDELDLPEYTEEDALADSQLEPAAE
SEVEPELELVSEPVTEEAFTELDELDLPEYTEEDALADAQLEPAVESEVEPELELASEPA
EEEASTELNELDLPEYTEEDALADAQLEPAAESEVESELELASDLEEEEPFTELNELDLP
EYTEEDALADAQLEPAVESEVEPELELATEPAEEEAFPELDELDLPEYTEEDALADAQLE
PAAEAEVEPELELASDLEEKETFTELDELDLPEYTEEDALADAQLEPAAESEVEPELELA
SVLEEEDSFTELDELDLPEYTEKDALADAQLEPAAESEVEPELGDETETLAQETESDALV
ADEDLLASVESAVDEVQPELLGATQDVPPTQSLANKAFDEEALHDWLSDNPDGEKPFSFD
RPLDAKTIDSAGMDIDAMLQMGGEDWNGFHLTPDQQAQLPDDVPEDEQAIWASETPEPQA
KPENWGSQEDLLDFDPQRDGYMTIDELMAQVESEEQGLNPDEEELKLDVGLDEFPDVIGD
IRDIDVDSGAEAAGKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDEIRQQAKRLIDVLNGR
V