Protein Info for CSW01_04810 in Vibrio cholerae E7946 ATCC 55056

Annotation: VanZ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 56 to 74 (19 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details PF04892: VanZ" amino acids 62 to 128 (67 residues), 30.5 bits, see alignment E=2.6e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to vcm:VCM66_0895)

Predicted SEED Role

"Hypothetical protein VpsQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>CSW01_04810 VanZ family protein (Vibrio cholerae E7946 ATCC 55056)
MQQRLKIGRQIYQQRPVSLVLFGLLALSTALASWLKSSGWHADYVYQLERAVGGDTHLHG
LLAMLLTLALYRVLSATSHSYKLVVFTGLLVAICCLIDEGMQAFTPLRTFSIQDILASFI
GVTLASVINTMLAGLLQRKQREPY