Protein Info for CSW01_04775 in Vibrio cholerae E7946 ATCC 55056

Annotation: polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 91 to 113 (23 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 408 to 428 (21 residues), see Phobius details PF04932: Wzy_C" amino acids 217 to 359 (143 residues), 82.2 bits, see alignment E=1.7e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003403)

Predicted SEED Role

"RbmD, similar to Lipid A core - O-antigen ligase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>CSW01_04775 polymerase (Vibrio cholerae E7946 ATCC 55056)
MLSFHKTLFFAFLLFVFWLPIPLGSNRPWAWSLNEIYVAFLLLGCLFLLPAAQCWLAIQR
AKVILIPVALFTLWSWMQSWPSLGLSSDQTLVFISAVKSLHYLQICLVAALLVDTPHKLK
MLATTMIASGICQAFYAGVILLLELQTSPFFSLPLNQRASGSFVYHNHLANFLMLNLCLG
FGLLIAELNHQTTQGWRNTLKKLLAILLSDKAFIRLGLVIMVIALVLTRSRMGNIAFFVA
LSIGSLLILLFYKSKPKSLYLLIVSLFIVDALVVSNWFGLDKVRQRLAETSLQNESRDDV
VRDALNAIQERPLTGFGNGTFYSTFPSYNQGEVALFYDHAHNDYVQFTLESGLIATSVFG
IMVLFCAWRALSAFRNRTNKTMRGIGLGSLMAIIGMLLHMSVDFPLQAPATALYFLFCLL
IANWSMTLPTPKYRSSRT