Protein Info for CSW01_04725 in Vibrio cholerae E7946 ATCC 55056

Annotation: sugar transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 35 to 57 (23 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 107 to 123 (17 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 315 to 333 (19 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 371 to 390 (20 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details amino acids 428 to 453 (26 residues), see Phobius details PF01943: Polysacc_synt" amino acids 11 to 262 (252 residues), 54.9 bits, see alignment E=9.5e-19 PF13440: Polysacc_synt_3" amino acids 27 to 310 (284 residues), 84.3 bits, see alignment E=9.5e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003413)

Predicted SEED Role

"polysaccharide export protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>CSW01_04725 sugar transporter (Vibrio cholerae E7946 ATCC 55056)
MIASLLKYAPVQVFSALSVFALIAVQTRFLSPEHYGVLAVAMVVLELVRAFSAQWLNTSM
LRLYPGYSDREQVQLVQSISLLVIIGSLLGFIVIAATLFIYQQLNWERLLVLSALLSVKS
IFQYQLELSRLNERLSVYRQATVLQSISAVVLSILSLSWAATIESALFALTLSFGIGALC
LGLPQRPKWHIAMLKRLLAYGIPIMLAGGIGVLGGRIDRLFIAHFVGMNETGVYAAQANL
LMGVLGLVFMVISMPLYPNLAKHAEDKIALVSQHKTYLHLLVTLTFPALLGLGILQDEII
RLFLGEQYLSRSSELFWVLAIAVYLINFKGHYLDHGLQFLLQTRKLLWVSLSGLIASIFL
LPLMLNQFGMFGAAITLLIVSGLVAILSFISSWRSGYRYAIGMDGIKVIISALLMGGYLY
LVKQWPLAIHSLFALAFYVTTSLLFYGICLWCLNAFNARQRLFSIWRPN