Protein Info for CSW01_04720 in Vibrio cholerae E7946 ATCC 55056

Annotation: glycosyl transferase family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 21 to 189 (169 residues), 45.4 bits, see alignment E=1.9e-15 PF20706: GT4-conflict" amino acids 162 to 311 (150 residues), 32.6 bits, see alignment E=9e-12 PF00534: Glycos_transf_1" amino acids 196 to 348 (153 residues), 85.9 bits, see alignment E=4.8e-28 PF13692: Glyco_trans_1_4" amino acids 211 to 347 (137 residues), 65.1 bits, see alignment E=1.7e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A0444)

Predicted SEED Role

"exopolysaccharide biosynthesis protein EpsF, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>CSW01_04720 glycosyl transferase family 1 (Vibrio cholerae E7946 ATCC 55056)
MSKILLIMPLSTLNWGEKNLGGVDSVCQMLVRQLAQQERPYHYRVLAFDPLNNHSYSGEI
IQLSKHLEVVICPLREKRFGLPLPSLLSNWLRIQEQLKDYQPDLVHSHLNSWMMGLGQKT
RNVLTLHSYRKIGRKPVSKLNDFVYEQIIPWVSHFSVDFYTCVGEELRQALSLETNKSIQ
VIGNPVDPDYFSANSANQNLPQNEVNLVTCALITRRKRIDRAIVLLRELKQRGQAATLRI
IGPNMDSAYYAQLQQLIKEYELEQDVIFLGKLNQREIVQQYQQANIGIFTSQQETFGLAP
LEMMAAGLPLISTPVGILGERQATFDQLGVVFMQEGQEAMIAERISQIKITDTQAIQTYL
RDQFAVENVIEHYQNLYREVLS